We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8CTR | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CU9 | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6c9c | - | https://www.biorxiv.org/content/10.1101/863571v1.abstract | Disorder and interfaces in proteins are two sides of the same coin | 2019 | B Seoane, A Carbone- bioRxiv, 2019 - biorxiv.org | c. Analysis of cluster 6c9c A ( PDB IDs for the structures are given in SI section S2). In the external wheel, we show one unbound structure and the chain structures containing the 12 different interfaces of this cluster: DRs in orange and IRs in blue |
| 2 | 6tys | - | https://www.biorxiv.org/content/10.1101/2021.07.09.451785.abstract | Study of Basic Local Alignment Search Tool (BLAST) and Multiple Sequence Alignment (Clustal-X) of Monoclonal mice/human antibodies | 2021 | IV Ferrari, P Patrizio- bioRxiv, 2021 - biorxiv.org | zone between 150-210 residues amino acids; with the exception of ID PDB 3I9G-3W9D 6TYS : (A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Antibodies all have the same basic structure consisting of two heavy and two light |
| 3 | 5v6d | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3188389 | A Centipede Toxin Family Defines a New Ancient Class of CS Defensins | 2018 | TS Dash, T Shafee, PJ Harvey, C Zhang- Available at SSRN, 2018 - papers.ssrn.com | structure of Sm2 against all structures of proteins contained within the Protein Data Bank ( PDB ) that are composed of more than 30 amino acids Thus, the minimal cysteine motif is by itself sufficient to generate a stable CS structure . Although the 2ds-CS architecture has |
| 4 | 3gvh | - | http://scholarsbank.uoregon.edu/xmlui/handle/1794/22884 | Investigating Bias in Protein Properties Inferred via Ancestral Sequence Reconstruction | 2017 | A Rickett - 2017 - scholarsbank.uoregon.edu | We formulate and analyze the electrostatics of 14 distinct protein families, each containing PDB structures of structural elements, send signals from cell to cell, and much more. Every protein sequence defines a unique 3-dimensional structure which a protein assumes through a |
| 5 | 5i3e | - | https://dukespace.lib.duke.edu/dspace/bitstream/handle/10161/14487/Schwabe_duke_... | Targeting Protein-Protein Interactions for Disruption of LSD1 (KDM1A) Complexes | 2017 | JL Schwabe - 2017 - dukespace.lib.duke.edu | (b) A predicted structural model generated used to determine sites of protein-protein interactions, which can be illustrated, for example, on available crystal structures in the CoREST samples were mapped onto an available LSD1/CoREST co-crystal structure ( PDB 2IW5) as a |
| 6 | 3h7f | - | https://link.springer.com/chapter/10.1007/978-3-030-18375-2_12 | Combinatorial Designing of Novel Lead Molecules Towards the Putative Drug Targets of Extreme Drug-Resistant Mycobacterium tuberculosis: A Future Insight for | 2019 | N Bachappanavar, S Skariyachan- Essentials of Bioinformatics, Volume II, 2019 - Springer | glyoxylate and dicarboxylate. The native structure of serine hydroxymethyltransferase ( PDB ID: 3H7F ) possessed two chains (A and B) with molecular weight of 95226.08 Da and a resolution of 1.5 (R-value free, 0.196) (Fig. 12.2a). Further |
| 7 | 6aqz | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26080 | Crystal structure of a GDP6OMe4ketoLxyloheptose reductase from Campylobacter jejuni | 2021 | JH Kim, A Hofmann, JS Kim- Proteins: Structure, Function, and, 2021 - Wiley Online Library | Page 9. Discussion Comparison with other related proteins The crystal structure of Camylobacter MlghC revealed a two-domain architecture commonly found in 36.7; rmsd 1.9 ) and Naegleria fowleri ( PDB ID 6AQZ ; Z-score 34.3; rmsd 2.3 ), and GDP-4-keto-6 |
| 8 | 6ar7 | - | https://www.mlsb.io/papers/MLSB2020_Learning_Super-Resolution_Electron_Density.p... | Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net | 2020 | B Mullick, Y Wang, P Yadav, AB Farimani - mlsb.io | The mesh grid displays the electron density surface for the structure and the underlying line diagram represents the protein structure from the PDB file. (a) The electron density map of PDB ID: 6AR7 (Green), with resolution of 2.10 |
| 9 | 5t8t | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4651464 | Characterization of a Plant S-Adenosylmethionine Synthetase from Acacia Koa | 2023 | D Borthakur, JT Carrillo- Available at SSRN 4651464 - papers.ssrn.com | structural 8 changes due to mutagenesis (Fig. 8). Species name and PDB numbers of the 9 structures Neisseria gonorrhoeae ( 5T8T ), Lactiplantibacillus plantarum (7R3B). From eukarya |
| 10 | 6n41 | - | https://bibliotecadigital.exactas.uba.ar/download/tesis/tesis_n7210_SosaHolt.pdf | Diseo, desarrollo y caracterizacin bioqumica y funcional de nanoanticuerpos VHH monovalentes dirigidos contra las protenas del virus de influenza tipo A | 2022 | CSS Holt - bibliotecadigital.exactas.uba.ar | El virus de la Influenza tipo A contina siendo responsable de brotes y epidemias, adems de pandemias con graves consecuencias para la salud humana. Los virus tipo H1N1 y ... En ambos casos el templado con mayor posición en ranking fue el PDB 6N41(A/Netherlands/002P1/1951 (H1N1)) dado su alta identidad de secuencia |