We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3oxk | 3o0m, 3lb5, 3p0t, 3r6f | http://search.proquest.com/openview/a6bee6255f2ecb6acc21ab8e2dbd25bd/1?pq-origsi... | Structural Biology for Drug Design: Applications in Two Systems | 2016 | KM Maize - 2016 - search.proquest.com | ... Structurally, the purple HIT-like clade (4EGU, 3OXK) appears to be highly related to the known Hint proteins, whereas the remaining three HIT-like clades differ from the Hints by the addition of a long 12-15 residue C- terminal helix ... Sequence alignment alone fails to properly separate these two structural subclasses: those that draw the C-terminal helix from the same monomer (2EO4, 3LB5, 3P0T, 3O0M, 3NRD, 3OHE, 3I4S, and 3I24), and those that cross over to ... |
| 2 | 3qhd | 3k14, 3q8h | http://search.proquest.com/openview/bed8a205da9b955be3ea1b46f7b199e9/1?pq-origsi... | Design and synthesis of IspD, IspE and IspF enzyme inhibitors of the methylerythritol phosphate pathway | 2016 | GM Goshu - 2016 - search.proquest.com | a fragment hit co-crystallized with Burkholderia pseudomallei (Bp) IspF ( PDB code: 3QHD ).2 Meroterpenoids contain non-isoprenoid structure Thiamine diphosphate (TDP) and Mg2+ bound to active site of E. coli DXS ( PDB code: 2O1S).68 Color: (magnesium) magenta |
| 3 | 3ej0 | 3gqt | http://theop11.chem.elte.hu/main_index_files/2011_VassM%C3%A1rton_Vegy%C3%A9szMS... | In silico modeling of cooperative ligand binding | 2011 | M Vass - theop11.chem.elte.hu | ... binding conformations of ligands. A set of 115 X-ray crystal structures was collected from the RCSB Protein Data Bank (PDB) containing at least two non-cofactor type ligands in close proximity to each other believed to be a result of cooperative binding. The commercial ... |
| 4 | 3i3r | 3nrr | https://repositorio.ufrn.br/jspui/handle/123456789/22864 | Caracterizao estrutural e avaliao da atividade biolgica de uma nova hipotensina identificada no veneno do escorpio Tityus stigmurus | 2016 | RJA Machado - 2016 - repositorio.ufrn.br | ... This study aimed to carry out the structural characterization and biological evaluation of a new hypotensin identified in T. stigmurus scorpion venom. The cluster TSTI0006C, obtained from the venom gland transcriptome, was analyzed and had its primary structure reduced after ... |
| 5 | 3r9r | 5vev, 3lp8 | https://lra.le.ac.uk/handle/2381/42871 | Studying the mechanism and action of Purine biosynthesis enzymes in Mycobacterium Tuberculosis H37RV | 2018 | SJ Almehmadi - 2018 - lra.le.ac.uk | Structural determination of SAICARs in M. tuberculosis and refinement, results tetraacetic acid F1 forward primer Fc calculated structure factors Fo observed structure factors Fo-Fc OD optical density ORF open reading frame PCR polymerase chain reaction PDB protein Data |
| 6 | 4iuj | 4p9a | http://search.proquest.com/openview/e042d9cdc035342db038fc10db68a8fe/1?pq-origsi... | Computer-Aided Drug Discovery and Protein-Ligand Docking | 2015 | H Li - 2015 - search.proquest.com | ... In addition to PAC-PB1N structures, two apo crystal structures of PAC in the absence of PB1 have been reported recently [322]. The first is a 1.9Å resolution structure of H1N1 PAC (PDB ID: 4IUJ). The second is a 2.2Å resolution structure of H7N9 PAC (PDB ID: 4P9A)... |
| 7 | 4eff | 4ix8 | https://www.nature.com/srep/2016/160107/srep18880/full/srep18880.html | Crystal structures of Mycobacterium tuberculosis HspAT and ArAT reveal structural basis of their distinct substrate specificities | 2016 | N Nasir, A Anant, R Vyas, BK Biswal- Scientific reports, 2016 - nature.com | ... site residues of I aminotransferases across species, we performed a structure and sequence ... The source of each sequence and PDB ID are: Pyrococcus horikoshii ArAT (1DJU ... 8 , Paracoccus denitrificans ArAT (2AY1) 18 , Burkholderia pseudomallei ArAT ( 4EFF ), C. glutamicum ... |
| 8 | 3uk1 | 3upt | http://scripts.iucr.org/cgi-bin/paper?tt5073 | High-resolution structures of Lactobacillus salivarius transketolase in the presence and absence of thiamine pyrophosphate | 2015 | P Lukacik, CMC Lobley, M Bumann - Section F: Structural , 2015 - scripts.iucr.org | ... In this work, we present high-resolution crystal structures of the L. salivarius UCC118 Tkt protein(LsTktA) in the presence and absence ... Burkholderia thailandensis (PDB entry 3uk1 ), B. pseudomallei (PDB entry 3upt ), ... |
| 9 | 3rd7 | 3u0a | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b01049 | Mycobacteria encode active and inactive classes of TesB fatty-acyl CoA thioesterases revealed through structural and functional analysis | 2017 | CMD Swarbrick, GV Bythrow, DG Arago - Biochemistry, 2017 - ACS Publications | ... Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterasealso contains an Ala residue at the active site, while two other ... The TesB thioesterase from M. avium (MaTesB) is a 276-amino acid protein and shares a low level of sequence similarity with the homologous TesB thioesterases from ... the orthologous TesB thioesterase from M. avium (PDB entry 3RD7, 41%).. ... |
| 10 | 4dq8 | 4ijn, 3p4i, 3r9p | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517563/ | Investigation of pyrophosphate versus ATP substrate selection in the Entamoeba histolytica acetate kinase | 2017 | T Dang, C Ingram-Smith- Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... ID 3P4I; Mycobacterium paratuberculosis, PDB ID 3R9P; Mycobacterium marinum PDB ID 4DQ8 . ... ACK structures were downloaded from Protein Data Bank ( PDB ): 4H0O (Entamoeba ... Structure superposition and modeling were performed using Accelrys Discovery Studio 3.5 ... |