We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3qi6 | 3qhx | http://scripts.iucr.org/cgi-bin/paper?nw5049 | The hyperthermophilic cystathionine -synthase from the aerobic crenarchaeon Sulfolobus tokodaii: expression, purification, crystallization and structural insights | 2017 | D Sato, T Shiba, S Mizuno, A Kawamura - Section F: Structural , 2017 - scripts.iucr.org | ... E. Ahmed & S. Gourinath, unpublished work) and Mycobacterium ulcerans Agy99 (PDB entries 3qi6 and 3qhx ... of StCGS was solved by molecular replacement using E. coli CGS (PDB entry 1cs1 ...at basic pH and elevated temperature is caused by changes in the protein structure. ... |
| 2 | 3sdw | 3sgw, 3qd5, 4em8, 3s5p | http://search.proquest.com/openview/d609872dcf4202be5c1c8582c3e46eb9/1?pq-origsi... | Evaluation of Trypanosoma brucei asparagine synthetase A and ribose 5-phosphate isomerase B as potential drug targets | 2015 | IMS Loureiro - 2015 - search.proquest.com | ... Figure 9. Licensed current therapies against HAT. (A) Structures of drugs used to treat. early and late stage disease. ... PARP procyclic acidic repetitive protein. PDB Protein Data Bank. ... molecules with a conserved core structure of glycosylphosphatidylinositol (GPI) anchored. ...Coccidioides immintis (PDB 3QD5, 3SDW and 3SGW) (Min et al, 2002), Anaplasma phagocytophilum (PDB 4EM8), Clostridium thermocellium (PDB 3PH3, 3PH4 3HEE, and 3HE8) (Jung et al, 2011), Giardia lamblia (PDB 3S5P) |
| 3 | 3p4i | 4dq8 | http://uir.unisa.ac.za/handle/10500/19148 | Mycobacterium tuberculosis kinases as potential drug targets: production of recombinant kinases in E. coli for functional characterization and enzyme inhibition | 2015 | V Lukman - 2015 - uir.unisa.ac.za | ... Other mycobacterial AKs have been deposited in the Protein Data Bank (www.pdb.org), with high levels of similarity to the putative Mtb AK (M. avum, pdb 3P4I at 74.4% and M. marinum pdb 4DQ8 at 75.1%). ... |
| 4 | 3njd | 3svk | http://search.proquest.com/openview/ee126ccbca4d4d8958dd7f9217f8fdd2/1?pq-origsi... | Protein 3-D Structure Representation for Alignment-Free Comparison and Structural Motif Discovery of Proteins, and Hierarchical Protein Classification | 2015 | S Singh - 2015 - search.proquest.com | ... a lot more diversity and complexity, rather than having a simple, unique rigid structure, and that ...of a growing number of methods, there is no widely accepted 3-D structural alignment method.None of the current methods for searching PDB are guaranteed to find true matches in ... |
| 5 | 3qi6 | 3ndn, 3qhx | http://link.springer.com/chapter/10.1007/10_2016_30 | l-Methionine Production | 2016 | J Shim, Y Shin, I Lee, SY Kim - 2016 - Springer | ... 1CS1 [73]) was aligned to MetB of Mycobacterium ulcerans (PDB ID: 3QI6, 3QHX [74 ... jejuni (PDBID:4OC9 [75]), and MetZ of Mycobacterium tuberculosis (PDB ID: 3NDN ... substrate specificity inthese four enzymes is required to establish detailed structurefunction relationships. ... |
| 6 | 3mpd | 3ndo, 3r8c, 3ngf, 3tcr, 3s4k, 3te8, 3r1j, 3qiv, 3sp1, 3qat, 3tcv, 3pm6, 3tsm, 4dhk, 4dyw, 4eg0, 3urr, 4i1u, 4f4f, 4je1, 4f3y, 4f82, 4lw8, 4pq9, 4q6u, 4ony, 4ose, 4kyx, 4o3v, 4pfz, 4qji, 4oo0, 4q14, 4oh7, 4wso, 3ol3 | http://210.212.192.152:8080/jspui/handle/123456789/466 | Statistical Potentials for Prediction of Protein-Protein Interactions | 2015 | A Dhawanjewar - 2015 - 210.212.192.152 | ... protein complexes by reducing the kinetic costs associated with structural rearrangements atthe protein 3 Page 13. Introduction binding sites (Rajamani et al., 2004). ... structure. Around 89 %of structures in the PDB are determined using X-ray Crystallography. How- ... |
| 7 | 4di1 | 3moy | http://search.proquest.com/openview/9e1cbcf92f9d0d582217fdb88b682434/1?pq-origsi... | Structural and bioinformatic analysis of ethylmalonyl-CoA decarboxylase | 2015 | RL Roberts - 2015 - search.proquest.com | ... is the murine methylmalonyl-CoA decarboxylase trimer (PDB code: 1ef8), bottom right is thehuman AUH protein hexamer (PDB code: 1hzd). ... Having a 3D structure of EMCD could allowresearchers to probe the active site and intelligently design structural perturbations to ... |
| 8 | 4iuj | - | https://ecommons.udayton.edu/uhp_theses/264/ | Toward a PA-Inhibitor Complex Crystal System: Influenza Polymerase Acidic Protein Fusion Constructs and Protein Expression | 2020 | R Kramb - 2020 - ecommons.udayton.edu | Figure 5 b (right) apo-PA crystal packing. PA ( PDB ID: 4IUJ ) is rendered as a surface, and a loop interest, our approach is to create different protein fusions of PA that will alter the crystal packing structure of PA, which could allow the visualization of the apo protein through |
| 9 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S1359511316300393 | A computational integrating kinetic study on the flexible active site of human acetaldehyde dehydrogenase 1 | 2016 | Y Xu, J Lee, HS Yang, ZR L, H Mu, JM Yang - Process , 2016 - Elsevier | ... In the first step, binding pocket residues were calculated based on the 3D structure of ALDH1via the Pck pocket ... We found 25 template PDB structures (1a4s, 1bxs, 1euh, 1o04, 1t90, 1uxt,1uzb, 1wnd, 2d4e, 2imp, 2j6l, 2o2p, 2ve5, 2w8n, 3b4w, 3ed6, 3ek1, 3i44, 3ifg, 3jz4 ... |
| 10 | 4iv5 | - | https://search.proquest.com/openview/23ab9486a9345db9395c7632a37426cc/1?pq-origs... | Theory, Design and Characterization of Protein Symmetry Combination Materials | 2020 | J Laniado - 2020 - search.proquest.com | The symmetry group of a structure can be used to understand how many structurally distinct contact types are required to hold all the Current Opinion in Structural Biology 2016, 39:134143 built into a protein building block in order for it to assemble into the desired architecture |