We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8UR2 | 2023 | 0 |
| 8UR4 | 2024 | 0 |
| 8UR5 | 2023 | 0 |
| 8UR7 | 2023 | 0 |
| 8UZ4 | 2023 | 0 |
| 8UZ8 | 2023 | 0 |
| 8UZI | 2023 | 0 |
| 8UZK | 2023 | 0 |
| 8UZM | 2023 | 0 |
| 8UZN | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4weo | - | http://onlinelibrary.wiley.com/doi/10.1002/1873-3468.12834/full | Rational design of Meso2, 3butanediol dehydrogenase by molecular dynamics simulation and experimental evaluations | 2017 | Z Pu, F Ji, J Wang, Y Zhang, W Sun, Y Bao- Febs Letters, 2017 - Wiley Online Library | Sequence and structure alignment of the four BDHs. (A) Structure superposition of the BDHs in Protein Data Bank ( PDB code 1GEG: cyan; 3A28: green; 3WYE: yellow; 4WEO : red). (B) Sequence alignment between the four BDHs |
| 2 | 3qhd | 3mbm, 3k14, 3jvh, 3f0d | http://search.proquest.com/openview/61c4474dc9c0d8c235198f27f91a8eb4/1?pq-origsi... | Characterization of potential anti-infective agents of Burkholderia pseudomallei targeting IspF | 2016 | JM Blain - 2016 - search.proquest.com | 103 Page 16. xiii Figure 3-3 Docking HGN-0006/HGN-0007 display structural differences in binding . 106 Page 22. xix PDB protein data bank PEEK polyether ether ketone rpm rotations per minute SAR structure activity relationship SDS sodium dodecylsulfate SE size exclusion |
| 3 | 3eg4 | 3mdx, 3qxi, 3lqw, 3laa, 3oc7 | http://www.theses.fr/2015GRENM005/abes | Nouvelles méthodes de calcul pour la prédiction des interactions protéine-protéine au niveau structural | 2015 | P Popov - 2015 - theses.fr | ... au niveau structural Thèse soutenue publiquement le « 28 Janvier 2015 », devant le jury composéde : ... blue, respectively). Right: native structure of Target 58 (grey) and medium-quality model pro- ...18 2.2 Query protocols for the PDB that were used to compose the bound bench- ... |
| 4 | 4dz4 | - | https://repositorio.unesp.br/handle/11449/193031 | Elucidao estrutural da especificidade por substratos de enzimas da biossntese de aminoglicosdeos e marginolactonas | 2020 | TP Cardoso - 2020 - repositorio.unesp.br | Marginolactone. Structure . Page 9. Lista de Ilustraes AERUGINOSA: GPUA- Q9I6K2; S. CLAVULIGERUS: PAH - P0DJQ3; B. THAILANDENSIS: BUR- Q2T3W4 [ 4DZ4 CDIGO DO PDB ]; D.RADIODURANS: DR_AGM- Q9RZ04; B. CALDOVELOX |
| 5 | 3vab | - | https://www.biorxiv.org/content/10.1101/2020.10.01.322594v1.full-text | The Phaeodactylum tricornutum Diaminopimelate Decarboxylase was Acquired via Horizontal Gene Transfer from Bacteria and Displays Substrate | 2020 | VA Bielinski, JK Brunson, A Ghosh, MA Moosburner- bioRxiv, 2020 - biorxiv.org | in the active site. The structure underscores features unique to the PtLYSA clan of DAPDC and provides structural insight into the determinants responsible for the substrate-promiscuity observed in PtLYSA. ... Akin to protomer 2 of PtLYSA, this segment is not included in the structures of DAPDC from Aquifex aeolicus (PDB 2P3E) and Brucella melitensis (PDB 3VAB). |
| 6 | 6mc0 | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4655406 | Synthesis and Kinetic Evaluation of Phosphomimetic Inhibitors Targeting Type B Ribose-5-Phosphate Isomerase from Mycobacterium Tuberculosis | 2023 | S Courtiol-Legourd, S Mariano, J Foret- Mycobacterium - papers.ssrn.com | of SoRpiA has not yet been presented, but that of the chloroplastic enzyme ( PDB code 6ZXT) [ An RpiA structure with R5P/Ru5P bound and with excellent resolution is 6MC0 (Legionella |
| 7 | 4h51 | - | http://www.sciencedirect.com/science/article/pii/S0166685115300311 | Structural basis for the relaxed substrate selectivity of Leishmania mexicana broad specificity aminotransferase | 2015 | J Wen, C Nowicki, W Blankenfeldt - Molecular and biochemical , 2015 - Elsevier | ... The most similar structure, however, is that of a putative aspartate aminotransferasefrom Leishmania major Friedlin (LmajASAT, PDB entry 4H51 [16]), which was notavailable when we first determined the structure of LmexBSAT. ... |
| 8 | 3rd5 | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213187/ | Comparative Study on Sequence–Structure–Function Relationship of the Human Short-chain Dehydrogenases/Reductases Protein Family | 2014 | NTN Tang, L Le - Evolutionary bioinformatics online, 2014 - ncbi.nlm.nih.gov | ... structures within each group were compared with each other and the selected structure was the ...GROUPS, PDB CODE AND NAME OF REPRESENTATIVE STRUCTURES. ... 4, 3rd5 chain A, aputative uncharacterized oxidoreductase protein from Mycobacterium Paratuberculosis. ... |
| 9 | 3p32 | - | http://arxiv.org/abs/1602.08119 | Prediction of Flavin Mononucleotide (FMN) Binding Sites in Proteins Using the 3D Search Motif Method and Double-Centroid Reduced Representation of Protein 3D Structures | 2015 | A Banerjee, VM Reyes - arXiv preprint arXiv:1602.08119, 2015 - arxiv.org | ... Since this work utilizes the benefits of using a DCRR structure as opposed to a AAR structureas discussed above one of the very important steps is to convert the structures into DCRR onesfrom the default AAR structure given in PDB. There can be two ways of doing this. ... |
| 10 | 3khp | - | https://link.springer.com/content/pdf/10.1186/s12866-020-01763-1.pdf | Proteinprotein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis | 2020 | G Bhargavi, S Hassan, S Balaji, SP Tripathy- BMC microbiology, 2020 - Springer | Rv0148 and Htdy interaction analysis The crystallographically determined structure of Htdy ( PDB code 3KHP ) and the predicted model structure of Rv0148 were used for docking using the ClusPro server b Ramachandran plot for the predicted model structure of Rv0148 |