We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9DB0 | 2025 | 0 |
| 9DB1 | 2025 | 0 |
| 9DBE | 2025 | 0 |
| 9DCN | 2024 | 0 |
| 9DEZ | 2024 | 0 |
| 9DF0 | 2025 | 0 |
| 9DGO | 2025 | 0 |
| 9DND | 2025 | 0 |
| 9DNE | 2025 | 0 |
| 9DQM | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p32 | - | https://ritdml.rit.edu/handle/1850/15250 | Mathematical Modeling and Screening of Ligand Binding Sites in Protein using the Tetrahedral Motif Method and Double-Centroid Representation | 2012 | VM Reyes - 2012 - ritdml.rit.edu | ... unannotated structures in PDB with unknown function to identify possible candidates that might have FMN bound to them. _ + ... Structures from the PDB for Screening using the screening procedure established for the above mathematical model for the binding site.[11] Page 19. ... |
| 2 | 4wbs | - | https://dash.harvard.edu/handle/1/33840644 | An antibiotic binds to the ATPase that powers lipopolysaccharide transport | 2016 | JM May - 2016 - dash.harvard.edu | This conclusion is supported by genetic, biochemical, and structural evidence, described below innermost layers of the cell envelope before turning our attention to the structure and assembly... though the C-terminus of E. coli LptB is not visible in the structures published by Sherman and collaborators, it is visible in the structure of Burkholderia phymatum LptB, crystallized with an N-terminal histidine tag in the absence of nucleotide (PDB: 4WBS) |
| 3 | 4g5d | - | https://parasitesandvectors.biomedcentral.com/track/pdf/10.1186/s13071-020-3883-... | Leishmania braziliensis prostaglandin F | 2020 | EVC AlvesFerreira, TR Ferreira, P Walrad - 2020 - parasitesandvectors.biomedcentral | 1b) and the 3D structure (Fig c 3D sequence alignments of protein sequences of LmjPGF2S (PBD ID 4G5D , in grey) and human ortholog share 51.4% similarity and 34.3% identity, modelling using the Research Collabora- tory for Structural Bioinformatics (RCSB) PDB suggests |
| 4 | 4di1 | 3moy | http://search.proquest.com/openview/9e1cbcf92f9d0d582217fdb88b682434/1?pq-origsi... | Structural and bioinformatic analysis of ethylmalonyl-CoA decarboxylase | 2015 | RL Roberts - 2015 - search.proquest.com | ... is the murine methylmalonyl-CoA decarboxylase trimer (PDB code: 1ef8), bottom right is thehuman AUH protein hexamer (PDB code: 1hzd). ... Having a 3D structure of EMCD could allowresearchers to probe the active site and intelligently design structural perturbations to ... |
| 5 | 3gtd | 3qbp, 3rrp | http://www.teses.usp.br/teses/disponiveis/60/60136/tde-15052014-084203/publico/T... | Structural and functional characterization of Trypanosoma cruzi fumarate hydratase isoforms | 2014 | RAP de Pdua - teses.usp.br | ... TcFHs structural models, built by homology modeling using the Leishmania major fumarase crystalstructure as template, were compared to ... Keywords: fumarase, fumarate hydratase, Chagas disease,selective inhibitors, crystal structure. ... The fainter structures correspond to the ... |
| 6 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S1359511316300393 | A computational integrating kinetic study on the flexible active site of human acetaldehyde dehydrogenase 1 | 2016 | Y Xu, J Lee, HS Yang, ZR L, H Mu, JM Yang - Process , 2016 - Elsevier | ... In the first step, binding pocket residues were calculated based on the 3D structure of ALDH1via the Pck pocket ... We found 25 template PDB structures (1a4s, 1bxs, 1euh, 1o04, 1t90, 1uxt,1uzb, 1wnd, 2d4e, 2imp, 2j6l, 2o2p, 2ve5, 2w8n, 3b4w, 3ed6, 3ek1, 3i44, 3ifg, 3jz4 ... |
| 7 | 3h81 | 3myb | http://aem.asm.org/content/early/2015/07/07/AEM.01686-15.short | Pseudomonas aeruginosa Isohexenyl Glutaconyl-CoA Hydratase (AtuE) Is Upregulated in Citronellate-grown Cells and Belongs to the Crotonase Family | 2015 | N Poudel, J Pfannstiel, O Simon, N Walter… - Applied and …, 2015 - Am Soc Microbiol | ... Initial phases were obtained with 223 molecular replacement using PHASER (21). Two searchmodels were constructed 224 (PDB accession code: 3H81, 37.0% seq. ... The stereochemistry 235of the structure was validated with MOLPROBITY (24) and various tools in COOT. ... |
| 8 | 4h4g | 3p0x, 3p4t, 3e5b, 3i4e, 3oib | http://search.proquest.com/openview/9b52df086a0858392215929c4a0b2187/1?pq-origsi... | Structure of the Vibrio cholerae fatty acid regulator FadR | 2015 | W Shi - 2015 - search.proquest.com | ... 3D6X, 1ZHG, 3DOY, 3DOZ, 3DP0, 3DP1, 3DP2, 3DP3, 3CF8, 3CF9, 3ED0, 3B7J, 3D04, 3AZ9,3AZ8, 3AZA, 3AZB, 4H4G, 2OKH, 2OKI ... (52, 70) and DNA-bound (PDB 1H9T and 1HW2) (69,70) structures are almost identical whereas the ligand-bound structure shows the ... |
| 9 | 3iew | - | https://pointloma.whdl.org/sites/default/files/Harper-Synthesis%20and%20Computat... | Synthesis and Computational Analysis of Novel IspF Inhibitors | 2018 | D Harper, M Rouffet, L Votapka- Bulletin of the American, 2018 - pointloma.whdl.org | The crystal structure of IspF was taken from the Protein Data Bank, code 3iew .7 The first As for the protein, the monomer's crystal structure was cleaned and protonated with the H++ webserver (version 3.2).11 The . pdb file was manually edited to correct these protonation states |
| 10 | 3r9r | - | https://www.freepatentsonline.com/y2020/0297660.html | APPLICATIONS OF SPERMINE AND DERIVATIVES THEREOF | 2020 | W Pan, W Zhu- US Patent App. 16/889,500, 2020 - freepatentsonline.com | pneumonia (4FGR, 4FE2), Mycobacterium abscessus ATCC 19977/DSM 44196 ( 3R9R ), Thermotoga maritime On the basis of the above results, the crystal structure conformations in synthetases of Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) are |