We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9DT8 | 2024 | 0 |
| 9DTC | 2024 | 0 |
| 9DU6 | 2024 | 0 |
| 9DU8 | 2024 | 0 |
| 9DU9 | 2024 | 0 |
| 9DUA | 2024 | 0 |
| 9DUD | 2024 | 0 |
| 9DUF | 2024 | 0 |
| 9DUG | 2024 | 0 |
| 9E0I | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3nwo | - | http://www.sciencedirect.com/science/article/pii/S0014579314001033 | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates | 2014 | Y Shinohara, A Miyanaga, F Kudo, T Eguchi - FEBS letters, 2014 - Elsevier | ... method using the Molrep program [16], with the crystal structure of the putative proline iminopeptidase Mycobacterium smegmatis (PDB code: 3NWO) being used ... The resulting coordinates and structure factors have been deposited in the Protein Data Bank (PDB code: 3WMR) ... |
| 2 | 3h81 | 3swx, 3oc7, 3myb, 4g7f, 4je1, 3moy, 3p5m, 4di1, 3pe8, 3trr, 3tlf, 3rsi, 3rrv, 3njb, 3ome, 3p85, 3n5o, 3q1t, 4hdt, 3t3w, 3he2, 4f82, 3lg6, 3qxi, 3qka, 3r0o, 3qxz, 3qmj, 3r6h, 3r9q, 3qre, 3r9s, 3r9t, 3qyr, 3qk8 | http://search.proquest.com/openview/0cb26ac6fdfa1ff7a54fca188db46fb4/1?pq-origsi... | Development and optimization of a clustering process that utilizes active site features to identify functionally relevant groups within protein superfamilies | 2015 | JB Leuthaeuser - 2015 - search.proquest.com | ... Key residues are identified from structural overlays ... Two protein structures of interest (3H8A blueand 2AKM purple) are aligned to a protein structure (1OEP gray ... In addition to forming ASPs, DASPcan also search the PDB and GenBank (NCBI protein) databases for proteins with ... |
| 3 | 3enk | - | http://etheses.whiterose.ac.uk/8424/ | Structural and Functional Studies of the Light-Dependent Protochlorophyllide Oxidoreductase Enzyme | 2014 | D Armstrong - 2014 - etheses.whiterose.ac.uk | ... the protein structure. POR isoforms in plants are also notable as components of the prolamellarbodies (PLBs), large paracrystalline structures that are precursors to the thylakoid ... similar structuralfeatures, leading to the production of a structural model for POR. A unique ... |
| 4 | 3tl6 | - | http://link.springer.com/chapter/10.1007/978-3-319-24462-4_3 | Statistical Analysis of Protein Structural Features: Relationships and PCA Grouping | 2014 | E Del Prete, S Dotolo, A Marabotti - Intelligence Methods for , 2014 - Springer | ... 1ODK, 1PK9, 1QE5, 1TCU, 1V4N, 1VMK, 1XE3, 1Z33, 2P4S, 3KHS, 3OZE, 3SCZ, 3TL6, 3UAV,4D98 ... The legend of the right refers to PDB codes (see Table 1) with the addition ... to con- sidersome structural features as putative markers of the peculiar structure-function properties ... |
| 5 | 6c9e | - | https://escholarship.org/uc/item/5rh0j6b2 | Molecular and shell biologyexamining the biochemistry and physiology of prokaryotic nanocompartments | 2020 | RJ Nichols - 2020 - escholarship.org | (B) Size comparison of the nanocompartments to GFP [ PDB : 1C4F], the HK97 viral capsid [ PDB : 1OHG], and the Lastly, given that there is no known structure of a DyP- packaging encapsulin, these nanocompartments may have a pore architecture that permits transit |
| 6 | 4i1v | 4i1u | http://www.sciencedirect.com/science/article/pii/S1047847714002172 | Crystal structure of Legionella pneumophila dephospho-CoA kinase reveals a non-canonical conformation of P-loop | 2014 | X Gong, X Chen, D Yu, N Zhang, Z Zhu, L Niu… - Journal of structural …, 2014 - Elsevier | ... The first DPCK crystal structure was solved and reported from Haemophilus influenzae (HiDPCK,PDB code 1jjv ( Obmolova et al ... DPCK structures are also available in the PDB, such asBurkholderia vietnamiensis DPCK (BvDPCK, PDB codes 4i1u, 4i1v, Seattle Structural ... |
| 7 | 3ijp | 4f3y | http://scripts.iucr.org/cgi-bin/paper?pu5392 | Cloning, expression, crystallization and preliminary structural studies of dihydrodipicolinate reductase from Acinetobacter baumannii | 2013 | S Kaushik, A Singh, M Sinha, P Kaur? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... 143, 617-623.] ), Bartonella henselae (BhDHDPR; PDB entry 3ijp ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), Burkholderia thailandensis (BtDHDPR; PDB entry 4f3y ; Seattle Structural Genomics Center for Infectious Disease, unpublished ... |
| 8 | 3svk | - | http://pubs.acs.org/doi/full/10.1021/cb400007k | Structure of Mycobacterial beta-Oxidation Trifunctional Enzyme Reveals Its Altered Assembly and Putative Substrate Channeling Pathway | 2013 | R Venkatesan, RK Wierenga - ACS chemical biology, 2013 - ACS Publications | ... From sequence alignments it is also found that the Mycobacterium avium thiolase FadA1, whose crystal structure (PDB id: 3SVK) has been deposited recently, has the same unique sequence features as mtTFE-?. This gene ... |
| 9 | 3qi6 | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.3158/full | Structural and mechanistic insights into homocysteine degradation by a mutant of methionine lyase based on substrateassisted catalysis | 2017 | D Sato, T Shiba, S Yunoto, K Furutani - Protein , 2017 - Wiley Online Library | ... Cys116 remains connected to the 2*/3* loop to form the active center. We previouslydemonstrated that the crystal structure of PpMGL is a ... 1e5f, 3acz and 5dx5), cystathionine-synthases (PDB: 1cs1 and 3qi6) and cystathionine -lyases (PDB: 1n8p and 2nmp). ... |
| 10 | 3js4 | - | http://escholarship.org/uc/item/2t44h65b.pdf | Highly Active Yeast MnSOD has a Novel Mechanism Involving Six-coordinate Mn (3+) Species | 2012 | Y Sheng - 2012 - escholarship.org | ... The enzyme structures of four classes of SOD. (A) Homo sapien CuZnSOD (pdb code: 1PU0); (B) Streptomyces coelicolor NiSOD (pdb code: 1T6U); (C) Saccharomyces cerevisiae MnSOD (pdb code: 3LSU); (D) Anaplasma phagocytophilum FeSOD (pdb code: 3JS4). Page 22. ... |