We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3meb | 4otl, 4f4f | http://digitalcommons.unl.edu/chemistrydiss/86/ | Bioinformatic and Biophysical Analyses of Proteins | 2017 | J Catazaro - 2017 - digitalcommons.unl.edu | structure of every protein encoded within a particular genome, the aim is to concentrate to steadily produce structural representatives of previously uncharacterized genes. Although the new structures have been deposited in the Protein Data Bank ( PDB ) 4 |
| 2 | 3h81 | 3myb | http://aem.asm.org/content/early/2015/07/07/AEM.01686-15.short | Pseudomonas aeruginosa Isohexenyl Glutaconyl-CoA Hydratase (AtuE) Is Upregulated in Citronellate-grown Cells and Belongs to the Crotonase Family | 2015 | N Poudel, J Pfannstiel, O Simon, N Walter… - Applied and …, 2015 - Am Soc Microbiol | ... Initial phases were obtained with 223 molecular replacement using PHASER (21). Two searchmodels were constructed 224 (PDB accession code: 3H81, 37.0% seq. ... The stereochemistry 235of the structure was validated with MOLPROBITY (24) and various tools in COOT. ... |
| 3 | 4j07 | - | http://informahealthcare.com/doi/abs/10.1517/17460441.2013.826188 | The eradication of leprosy: molecular modeling techniques for novel drug discovery | 2013 | S Anusuya, J Natarajan - Expert opinion on drug discovery, 2013 - informahealthcare.com | ... M. leprae (Table 1) were elucidated using X-ray diffraction methods and were deposited in ProteinData Bank (PDB). ... In case of the structure of riboflavin synthase (PDB ID: 4JO7), the resolution is 1.95 ? which ... Table 2. Results of Ramachandran plot analysis for 1BVS and 4J07. ... |
| 4 | 4f40 | 4h51, 4h7p, 4f2n | https://www.preprints.org/manuscript/201902.0122 | Leishmania Proteomics: An in Silico Perspective | 2019 | CA Padilla, MJ Alvarez, A Combariza - 2019 - preprints.org | PDB -codes but same structure and proteins with equal structures but elucidated from dif thase from L. major (PGF; PDB ID: 4F40 ) is involved in the lipid metabolic pathway, acting FPPS protein ( PDB ID: 4JZX) is potently inhibited by bisphosphonates in the trypanosomatid |
| 5 | 4qtp | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Discovery of antigens for early detection of Mycobacterium avium subsp. paratuberculosis and analysis of characteristics using bioinformatics tools. | 2015 | HT Park, HE Park, MK Shin, YI Cho - Korean Journal of , 2015 - search.ebscohost.com | ... MAP MAP0380 coding anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... MAP1204p60 domain (PDB ID: 3i86, TM-score: 0.547), sequence identity 100 ... |
| 6 | 3tcq | - | https://www.biorxiv.org/content/10.1101/2020.05.27.108969v1.abstract | Common substructures and sequence characteristics of sandwich-like proteins from 42 different folds | 2020 | A Kister- BioRxiv, 2020 - biorxiv.org | structural classification in PDBSum database30 does not support sandwich-like architecture was examined. For secondary structure analysis, the information about localization of strands in sequences was taken from PDB .31 For supersecondary structure (SSS) of the domains |
| 7 | 3ng3 | - | http://link.springer.com/article/10.1007/s12275-016-6029-4 | Structural insight for substrate tolerance to 2-deoxyribose-5-phosphate aldolase from the pathogen Streptococcus suis | 2016 | TP Cao, JS Kim, MH Woo, JM Choi, Y Jun, KH Lee - Journal of , 2016 - Springer | ... avium DERA (MaDERA, PDB code: 3NG3) as a search mo- del (Baugh et al., 2015)using the CCP4i program MOLREP (Vagin and Teplyakov, 2010). The FL-SsDERAstructure was used as a search model for SL-SsDERA. ... |
| 8 | 3gaf | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785404/ | The three-dimensional structure of Clostridium absonum 7-hydroxysteroid dehydrogenase: new insights into the conserved arginines for NADP (H) | 2016 | D Lou, B Wang, J Tan, L Zhu, X Cen, Q Ji - Scientific reports, 2016 - ncbi.nlm.nih.gov | ... They are Brucella Melitensis 7-HSDH with no ligand (PDB code: 3GAF) at resolution 2.20 and Escherichia coli 7-HSDH (EC 7-HSDH; PDB code: 1FMC ... As one of the SDRs, with thesimilar structure to the two 7-HSDHs above, CA 7-HSDH possesses the ... |
| 9 | 4lfy | - | http://www.ingentaconnect.com/contentone/ben/cchts/2017/00000020/00000006/art000... | Targeting Pyrimidine Pathway of Plasmodium knowlesi: New Strategies Towards Identification of Novel Antimalarial Chemotherapeutic Agents | 2017 | M Rashmi, MK Yadav, D Swati- Combinatorial chemistry & high, 2017 - ingentaconnect.com | The structural quality factors and overall Z-scores of simulated PkDHOase structure were found within the valid limits, and thus may be used for drug design purposes Organism Query Coverage (%) Identity (%) PDB ID Burkholderia cenocepacia J2315 96 32 4LFY |
| 10 | 3kc6 | 3khw, 4p9a | https://core.ac.uk/download/pdf/196247958.pdf | Identification and characterization of mammalian signatures of viral adaptation: a computational approach | 2015 | A Marquardt - 2015 - core.ac.uk | Table 2.2: Table showing the in different subtypes used in this work with proteins that have subtype specific structures available with corresponding pdb identifier, which are imple |